and give "peaks.wig" as being the concentrate on file of agplus. In this case, "common density" in the plot is usually regarded as "typical peak detection price".
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A. The region underneath the curve in plot can make group-averaged go through/peak quantity. The "density" was defined so that the region underneath the (smoothed) curve can make whole aggregated read/peak figures.
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The names of the first column were being taken from ChromHMM definition (4th column in initial file). We merged some classes (the second column; StrongEnhancer and WeakEnhancer) to lessen the use of colors in the plot of this instance.
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